FoldSeek: Structure-based Lookup
Some types of search, such as by sequence or structure similarity, require specialized tools. Foldseek is a protein structure similarity lookup algorithm.
Find others like 3kwd
Inputs
PDB file: Protein structure file.
Database: A specific database to search against.
Outputs
List of hits: A list of database hits, structurally aligned to the input.
TM-Score: Score of structural identity between two proteins. Ranges from 0.0 to 1.0, with 0.0 being no match, 1.0 being exact match, and 0.5 being same fold/family.
Fident: Percentage sequence identity between the database hit and input after structural alignment. 100 means identical sequence match.
Runtime
Scales with the size of the database used. Typically 0.5 to 1.0 min.
Examples
Find similar proteins to MA998
Lookup structures like P42212
