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Learn the Basics

Computational protein design workflows typically database searches, predictions of protein folding and function, designing new functional molecules, and visualizing the results. This tutorial walks you through a streamlined workflow for molecule programming using cutting-edge AI/ML techniques, with links to dive deeper into each component.

We’ve also integrated innovative de novo design methods so that you'll be able to create brand-new proteins from scratch with no template needed.

Running the Tutorial Prompts

You can run this tutorial from any browser using the link 310 Copilot

How to Use this Guide

Click on the Try button to jump straight into a session, or learn more about each topic by clicking on the headers below.

Folding

Fold ‘DIHICGICKQQFNNLDAFVAHKQSGSQ’

Docking

Dock biotin into P22629

Biotin

Function prediction

Load Q9UPY3 and predict its function

NameScore
Endoribonuclease Dicer0.466
3.1.26.30.409
Endoribonuclease Dcr-10.033

Visualization

Label the distance between 11 SG and 8 OD1

Protein Design

Redesign A0A1L9RXX7 residues 40-60

design1

Binding Site Prediction

Predict pockets in P08100

resip(bind)
2650.925
2680.8773
2120.8214
pocket1

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