Molecular Geometry
Molecular geometry and labeling allows users to analyze the arrangement of atoms within a molecule. It allows users to measure distances between atoms, angles among three atoms, and dihedral angles among four. T
Measure Atomic Distance
Label the distance between 11 SG and 8 OD1
Show the distances between 1 and 70-75 in tiffany blue
Shows a dotted line and labels the distance between two specific atoms. The default measurement is in nanometers, but you can request angstroms.
Measure Atomic Angle
Label the angle between 3NH2, 3 CZ, and 3.NH1
Displays and labels the angle, in degrees, formed by three specific atoms.
Show Bonds and Contacts
Show bonds
Blue: Polar or ionic interactions, highlighting areas of electrostatic attraction between differently charged regions. Yellow/Orange: Weaker or less specific interactions, such as Van der Waals forces. These interactions are generally not as strong as hydrogen bonds but still contribute to the stability of the molecular configuration.
Label Residues
Label residues 1-2, and 7O
Displays the residue name and number for specified residues or atoms, helping with identification.