Molecular Visualization Using Color Schemes
Color by secondary structure
Color by plddt
Color molecules by their atomic chemical elements
- By Element: Colors atoms by standard conventions. C: gray, O: red, N: blue, H: white, S: yellow, ...
Color proteins by their secondary structure
- Secondary Structure: Colors according to helices, sheets, turns, and other.
Color Molecules by Residue Name
- Residue name: Colors reach residue name a different color.
Color Molecules by b-Factor Values
- b-Factor: Uses a gradient based on the b-factor column
Color Molecules by pLDDT Score
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pLDDT: Very low: orange, Low: yellow, High: cyan, Very high: blue. Assumes b-factor column is pLDDT values.
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By Name: Red, blue, peach, moonlight green, ...
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Custom: #78FF00, #0078FF, ...