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AlphaFold3 for Protein-Protein Docking

AlphaFold3 (aka AF3) is a newer version of F2 using diffusion for predicting the 3D structure of proteins + nucleic acids + small molecules + post-translational modification. It is capable of multi-chains and therefore is also a cofolding or docking method.

AlphaFold3 Examples and Docking Scripts

Evaluating Protein-Protein Docking Results