M3DNA

Prompt

The protein contains a Helicase superfamily 1/2 ATP-binding domain of the DinG/Rad3-type. It also has a binding site for a 4 iron, 4 sulfur cluster.

AI Generated Sequence

245 AAs | 25.51 kDa | 27.33 kDa (with tag)
MSLLLSPTRELAAQIAEELAALAPARGLRVAALVGGVDRARQVAALRAGVDVVVATPGRLLDHLAAGALALGRVRFLVLDEGDRMLDMGFHPDVRAIVALTPAGRQTLVFSATLPPEIAALAARHLRDPVVHVDGPAAATLPTLHHHLYAVDGPEKARRLLALLAALPAGRALVFTNTRRRCEALHAELVAAGVPVAHLHGDLSQPARERALAAFADGLDRVLVTAEIGAGTDYRAALAALAARG

Ligand/Cofactor

Adenosine triphosphate

C1=NC(=C2C(=N1)N(C=N2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N

Computational Metrics

PLDDT

91

GPT Score

67.8

AAComp

82.55

DiffDock Confidence

-1.76

Seqdif (SeqID)

50.66 (MEN8185071)

Structdif (F-Target)

80.7 (7oi6 x)

ProtNLM

NameScore
DEAD/DEAH box helicase0.523
ATP-dependent RNA helicase0.158
Helicase0.048
RNA helicase0.043
3.6.4.130.032
ATP-dependent RNA helicase RhlE0.029
Helicase ATP-binding domain-containing protein0.025
ATP-dependent helicase0.022
ATP-dependent RNA helicase SrmB0.018
Helicase conserved C-terminal domain-containin...0.013

Experimental Results

CompanyVariantExpression SystemConcentration (mg/ml)Total Yield (µg)Purity (%)TM (°C)Tm(oC w/2mM AMP-PNP)
TierraT3Enzyme Optimized SystemN/AN/AN/AN/AN/A
TierraT4Enzyme Optimized SystemN/AN/AN/AN/AN/A
TierraT3N/AN/AN/AN/AN/AN/A
TierraT4Biologics Optimized SystemN/AN/AN/AN/AN/A
ArctorisN/AE. coliN/AN/AN/AN/AN/A

Data

106atp_-1.20 | 55
Tierra Image 1Tierra Image 2Arctoris Image 1
Designed by MP, using an AMD MI250 GPU