MN4R3

Prompt

6.3.2.10

Ligases. Forming carbon-nitrogen bonds. Acid--amino-acid ligases.(peptide synthases). UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase.

AI Generated Sequence

291 AAs
MIALTAAEIAALTGGRLAGDAAVVTGVSIDSRTIAPGDLFVALKGERFDGHDFLAQALAAGAVGVLVSRLAGIDGLPQLVVADTRLALGQLAGWVREQTGAPVVAITGSNGKTTVKEMLASILSRRGNVLATRGNLNNDIGVPMTLLEMTPEHRYAVIELGANRLGEIAHYTGLTRPDVALINNAGAAHVGEFGGPEGVALEKGEIFEGLPADGTAVLNLDDKFADYWSRIAADRKVLTFGLANADVHATSIRTDELGASTFTLHTPLGSTDVTLPLVGRHNVANALAAAA

Ligand/Cofactor

ATP

C1=NC(=C2C(=N1)N(C=N2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N

Validation Metrics

PLDDT98.0
NLMSIM90.0
AACOMP89.8
Seqdif (SeqID)37.8 (MDN5508684.1)
Structdif (F-Target)4.4 (4cvm A)

ProtNLM

NameScore
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase0.717
6.3.2.100.187
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase0.042
MurF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine0.023
D-alanyl-D-alanine-adding enzyme0.005
UDP-MurNAc-pentapeptide synthetase0.005
Designed by MP, using an AMD MI250 GPU